Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs144053467 | chr14:59709313 | A/G | 2.57E-8 | 486 | 16.07 | 14.9 | 5.1 | KM Plot |
| THCA | rs144069734 | chr6:24423584 | G/GT | 5.55E-15 | 487 | 16.37 | 14.9 | 11.07 | KM Plot |
| THCA | rs144101470 | chr6:153312308 | TTC/T | 4.91E-5 | 484 | 15.17 | 17.83 | 10.45 | KM Plot |
| THCA | rs144105701 | chr2:48071041 | G/C | 1.02E-7 | 489 | 15.33 | 17.93 | 8.27 | KM Plot |
| THCA | rs144130638 | chr6:24413918 | AAAC/A | 4.77E-15 | 489 | 16.38 | 14.85 | 11.07 | KM Plot |
| THCA | rs144224931 | chr19:43575030 | A/G | 0.000246 | 486 | 15.32 | 18.93 | 10.08 | KM Plot |
| THCA | rs144304188 | chr2:241523790 | G/A | 2.1E-11 | 484 | 15.9 | 15 | 19.27 | KM Plot |
| THCA | rs144350940 | chr10:104715531 | A/G | 3.05E-8 | 489 | 15.33 | 17.33 | 19.1 | KM Plot |
| THCA | rs144407090 | chr6:24417968 | G/A | 4.55E-15 | 490 | 16.37 | 14.85 | 11.07 | KM Plot |
| THCA | rs144456935 | chr2:48039251 | CCT/C | 1.16E-7 | 486 | 15.3 | 17.53 | 8.27 | KM Plot |
| THCA | rs144556615 | chr19:43579815 | G/A | 0.000256 | 485 | 15.32 | 18.3 | 10.08 | KM Plot |
| THCA | rs144613773 | chr3:96792902 | T/TA | 2.8E-10 | 486 | 15.9 | 15.17 | 24.65 | KM Plot |
| THCA | rs144752746 | chr1:91712422 | G/C | 8.46E-6 | 484 | 15.77 | 17.03 | 17.77 | KM Plot |
| THCA | rs144801027 | chr9:15861687 | TATTC/T | 0.000155 | 489 | 8.95 | 16.32 | 15.83 | KM Plot |
| THCA | rs144842022 | chr7:75879360 | TTTA/T | 6.12E-5 | 484 | 16.63 | 16.37 | 11.3 | KM Plot |